Once upon a time there was a code. This was not a normal code, this was a very special code visible for only the select few, who had the permission to play (or tinker) with it. It was what we call today proprietary software.
The fields of biotechnology, chemistry, medicine and pharmaceutics have been undergoing an enormous process of digitalization for the past 10-20 years. Many programming languages and frameworks have emerged, each trying its best to attract as many followers as possible.
Sequencing throughput is only going to increase, and it is a worthwhile exercise to inspect one's own bioinformatics set up to ensure readiness and modularity for future technologies and data. Use an Adapter design pattern now to avoid major headaches later!